Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4653

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13021 and 13022 are separated by 149 nucleotides mRNA_4653: 13021 - KOG1203 Predicted dehydrogenase, at 698,534 to 699,580 13021 mRNA_4654: 13022 - KOG4253 Tryptophan-rich basic nuclear protein, at 699,730 to 700,546 13022

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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697,620 + -0.1
697,623 - -0.6
697,658 + +0.9
697,664 + +0.8
697,751 - -1.8
697,766 - -1.8
697,792 + -0.0
697,936 + -0.4
697,941 - +2.1
697,948 - +0.8
698,086 - -0.8
698,105 + -0.6
698,251 - +0.9
698,285 + +1.3
698,353 + +0.2
698,362 + +0.1
698,391 + +0.7
698,690 + 13021 mRNA_4653 0.15 +0.2
698,835 + 13021 mRNA_4653 0.29 -0.0
698,874 - 13021 mRNA_4653 0.32 +0.3
699,016 + 13021 mRNA_4653 0.46 +0.9
699,223 + 13021 mRNA_4653 0.66 +0.0
699,283 - 13021 mRNA_4653 0.72 +0.3
699,286 - 13021 mRNA_4653 0.72 +0.1
699,456 + 13021 mRNA_4653 0.88 +1.0
699,557 + -0.2
699,616 - +0.2
699,630 + +0.2
699,666 + +0.5
699,745 - -0.2
700,148 + 13022 mRNA_4654 0.51 +0.7
700,165 - 13022 mRNA_4654 0.53 +1.6
700,419 - 13022 mRNA_4654 0.84 +0.9

Or see this region's nucleotide sequence