Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4667

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13034 and 13035 are separated by 480 nucleotides13035 and 13036 are separated by 731 nucleotides mRNA_4666: 13034 - KOG3429 Predicted peptidyl-tRNA hydrolase, at 732,811 to 733,473 13034 mRNA_4667: 13035 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 733,954 to 735,722 13035 mRNA_4668: 13036 - Hypothetical Protein, at 736,454 to 737,863 13036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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733,147 - 13034 mRNA_4666 0.51 -0.5
733,755 + -0.0
733,933 - +0.2
734,000 - +0.1
734,030 + +1.3
734,783 + 13035 mRNA_4667 0.47 +0.3
734,880 + 13035 mRNA_4667 0.52 -1.7
734,895 + 13035 mRNA_4667 0.53 -1.0
734,902 - 13035 mRNA_4667 0.54 +1.3
735,030 - 13035 mRNA_4667 0.61 +0.5
735,041 + 13035 mRNA_4667 0.61 +0.5
735,271 - 13035 mRNA_4667 0.74 +0.2
735,512 + 13035 mRNA_4667 0.88 +0.7
736,294 - +0.0

Or see this region's nucleotide sequence