Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4670

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13036 and 13037 are separated by 322 nucleotides13037 and 13038 are separated by 251 nucleotides13038 and 13039 are separated by 200 nucleotides mRNA_4668: 13036 - Hypothetical Protein, at 736,454 to 737,863 13036 mRNA_4669: 13037 - K12627 LSM8 U6 snRNA-associated Sm-like protein LSm8, at 738,186 to 738,564 13037 mRNA_4670: 13038 - Hypothetical Protein, at 738,816 to 739,415 13038 mRNA_4671: 13039 - Hypothetical Protein, at 739,616 to 741,558 13039

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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737,869 + +1.0
737,870 - +0.3
737,871 + +1.4
737,875 + +0.8
738,994 + 13038 mRNA_4670 0.30 -0.1
739,168 + 13038 mRNA_4670 0.59 -0.4
739,343 - 13038 mRNA_4670 0.88 +1.1
739,460 - +2.2
739,481 - -0.4
739,609 + +0.7
739,730 - -0.5
739,743 + -0.4
739,758 + -0.0
740,179 - 13039 mRNA_4671 0.29 +1.3

Or see this region's nucleotide sequence