Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4724

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13091 and 13092 are separated by 220 nucleotides mRNA_4723: 13091 - Hypothetical Protein, at 861,099 to 862,312 13091 mRNA_4724: 13092 - Hypothetical Protein, at 862,533 to 863,753 13092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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862,525 - -0.2
862,548 + +0.4
862,650 - -0.1
862,687 + 13092 mRNA_4724 0.13 -0.8
862,991 + 13092 mRNA_4724 0.38 -0.0
863,325 - 13092 mRNA_4724 0.65 +0.1
863,533 - 13092 mRNA_4724 0.82 -0.6
863,697 + +0.2
863,761 - +0.3
863,866 - +0.4
864,246 - +0.4
864,246 - +0.3
864,254 - +0.4
864,264 + -0.1
864,523 - -0.2
864,696 - +1.3
864,714 + +1.1
864,743 + +1.4

Or see this region's nucleotide sequence