Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4755

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13123 and 13124 are separated by 305 nucleotides mRNA_4755: 13123 - Hypothetical Protein, at 934,483 to 935,126 13123 mRNA_4756: 13124 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 935,432 to 936,982 13124

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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933,584 - +1.2
933,598 + -2.4
933,737 + +1.0
933,760 + +1.0
933,760 + -0.6
933,770 + +1.2
933,874 - +0.3
933,878 + +2.8
933,914 + +0.9
934,279 - +1.8
934,279 - -0.3
934,286 + -1.1
934,334 - +3.1
934,633 - 13123 mRNA_4755 0.23 +2.1
934,740 + 13123 mRNA_4755 0.40 +0.6
934,913 + 13123 mRNA_4755 0.67 +0.3
935,004 - 13123 mRNA_4755 0.81 +1.0
935,059 + 13123 mRNA_4755 0.89 +1.3
935,062 + +2.0
935,339 - +1.3
935,339 - +0.8
935,343 + -0.0
935,346 + +0.5
935,400 - +0.4
935,506 - +0.1
935,640 + 13124 mRNA_4756 0.13 -0.3
935,890 - 13124 mRNA_4756 0.30 +1.2
935,987 - 13124 mRNA_4756 0.36 +0.6
936,108 + 13124 mRNA_4756 0.44 +0.9

Or see this region's nucleotide sequence