Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4768

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13135 and 13136 are separated by 286 nucleotides13136 and 13137 are separated by 325 nucleotides mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963,483 to 966,203 13135 mRNA_4768: 13136 - Hypothetical Protein, at 966,490 to 969,299 13136 mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969,625 to 971,504 13137

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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965,520 + 13135 mRNA_4767 0.75 -0.4
965,595 - 13135 mRNA_4767 0.78 +0.2
965,611 - 13135 mRNA_4767 0.78 +1.2
965,660 + 13135 mRNA_4767 0.80 +2.1
965,667 - 13135 mRNA_4767 0.80 +0.1
965,667 + 13135 mRNA_4767 0.80 +1.5
965,672 + 13135 mRNA_4767 0.80 +0.8
965,785 - 13135 mRNA_4767 0.85 -0.2
965,799 - 13135 mRNA_4767 0.85 +0.5
965,800 - 13135 mRNA_4767 0.85 +0.0
965,959 + -0.7
966,111 + +0.2
966,126 + +0.1
966,150 + -1.0
966,190 + +0.5
966,243 - +1.3
966,282 - -0.9
966,296 + +0.9
966,443 + +1.4
966,535 - +0.5
966,540 + -1.2
966,863 - 13136 mRNA_4768 0.13 -0.1
967,112 + 13136 mRNA_4768 0.22 +0.5
967,121 + 13136 mRNA_4768 0.22 -0.2
967,121 + 13136 mRNA_4768 0.22 +0.2
967,219 + 13136 mRNA_4768 0.26 +0.0
967,396 - 13136 mRNA_4768 0.32 +3.1
967,598 - 13136 mRNA_4768 0.39 -2.1
967,614 - 13136 mRNA_4768 0.40 +0.4
967,633 + 13136 mRNA_4768 0.41 +0.4
967,636 + 13136 mRNA_4768 0.41 +0.0
967,675 - 13136 mRNA_4768 0.42 -0.2
967,737 + 13136 mRNA_4768 0.44 +0.2
967,959 - 13136 mRNA_4768 0.52 -1.1
967,966 - 13136 mRNA_4768 0.53 -0.4
967,971 - 13136 mRNA_4768 0.53 +0.3
968,098 - 13136 mRNA_4768 0.57 +1.0
968,103 - 13136 mRNA_4768 0.57 -0.5
968,103 + 13136 mRNA_4768 0.57 -0.7
968,103 - 13136 mRNA_4768 0.57 +0.4
968,109 - 13136 mRNA_4768 0.58 +0.3
968,115 - 13136 mRNA_4768 0.58 +1.1
968,115 - 13136 mRNA_4768 0.58 +2.1
968,129 - 13136 mRNA_4768 0.58 +0.2
968,135 - 13136 mRNA_4768 0.59 +0.8
968,152 + 13136 mRNA_4768 0.59 -0.2
968,154 + 13136 mRNA_4768 0.59 +1.4
968,193 - 13136 mRNA_4768 0.61 +1.1
968,193 + 13136 mRNA_4768 0.61 -1.2
968,231 - 13136 mRNA_4768 0.62 +0.0
968,280 + 13136 mRNA_4768 0.64 +1.1
968,281 - 13136 mRNA_4768 0.64 -0.5
968,445 - 13136 mRNA_4768 0.70 +2.3
968,580 - 13136 mRNA_4768 0.74 +0.0
968,603 + 13136 mRNA_4768 0.75 -0.1
968,612 - 13136 mRNA_4768 0.76 +0.1
968,732 + 13136 mRNA_4768 0.80 +2.1
968,860 + 13136 mRNA_4768 0.84 +0.4
968,872 - 13136 mRNA_4768 0.85 +1.1
969,046 - +0.5
969,154 + +2.2
969,160 - +0.4
969,428 - +0.1
969,437 + +1.9
969,447 - +0.0
969,524 + +0.4
969,635 - +1.4

Or see this region's nucleotide sequence