Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4775

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13142 and 13143 are separated by 629 nucleotides13143 and 13144 are separated by 903 nucleotides mRNA_4774: 13142 - K02998 RP-SAe, RPSA small subunit ribosomal protein SAe, at 987,579 to 988,756 13142 mRNA_4775: 13143 - K01724 PCBD, phhB 4a-hydroxytetrahydrobiopterin dehydratase, at 989,386 to 989,809 13143 mRNA_4776: 13144 - Hypothetical Protein, at 990,713 to 991,663 13144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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988,806 - +0.4
988,996 - -1.6
989,027 + +0.6
989,029 - -0.1
989,296 - -0.5
989,591 + 13143 mRNA_4775 0.48 +1.8
989,611 + 13143 mRNA_4775 0.53 -0.1
989,745 - 13143 mRNA_4775 0.85 -0.8
989,745 + 13143 mRNA_4775 0.85 +1.4
989,750 - 13143 mRNA_4775 0.86 +0.2
989,750 - 13143 mRNA_4775 0.86 -0.6
989,801 + +0.7
990,054 - +1.0
990,057 + +1.0
990,192 + +0.6
990,224 - -0.3
990,342 - +0.3
990,352 - -0.5
990,363 - +2.1
990,372 - +0.1
990,807 - +1.1

Or see this region's nucleotide sequence