Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4781

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13148 and 13149 are separated by 384 nucleotides13149 and 13150 are separated by 20 nucleotides mRNA_4780: 13148 - SUPERFAMILY--SSF52047, at 997,271 to 1,001,046 13148 mRNA_4781: 13149 - Hypothetical Protein, at 1,001,431 to 1,001,991 13149 mRNA_4782: 13150 - Hypothetical Protein, at 1,002,012 to 1,003,066 13150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,000,443 + 13148 mRNA_4780 0.84 -2.5
1,000,570 + 13148 mRNA_4780 0.87 +0.4
1,000,628 - 13148 mRNA_4780 0.89 -0.6
1,000,682 + +0.2
1,000,700 - -1.2
1,000,735 + +0.3
1,000,871 - -0.5
1,000,887 + -1.3
1,000,936 + -1.1
1,000,948 - +2.3
1,000,993 - +0.4
1,001,019 - +0.8
1,001,021 - +1.2
1,001,028 + +0.7
1,001,057 - +0.5
1,001,059 + +0.1
1,001,099 + +0.2
1,001,175 + +2.4
1,001,214 - -0.6
1,001,218 - +1.5
1,001,225 - +0.9
1,001,351 + -0.4
1,001,360 - +1.7
1,001,366 - +1.0
1,001,366 - +0.6
1,001,367 - -1.1
1,001,383 - -0.2
1,002,599 - 13150 mRNA_4782 0.56 +2.2
1,002,987 + +0.8

Or see this region's nucleotide sequence