Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4788

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13155 and 13156 are separated by 212 nucleotides13156 and 13157 are separated by 358 nucleotides mRNA_4787: 13155 - SUPERFAMILY--SSF49785, at 1,011,641 to 1,014,528 13155 mRNA_4788: 13156 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,014,741 to 1,016,024 13156 mRNA_4789: 13157 - K18402 PHF20 PHD finger protein 20, at 1,016,383 to 1,018,943 13157

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,013,896 + 13155 mRNA_4787 0.78 +0.6
1,014,139 - 13155 mRNA_4787 0.86 +1.0
1,014,905 + 13156 mRNA_4788 0.13 -1.2
1,015,242 + 13156 mRNA_4788 0.39 +1.6
1,015,640 - 13156 mRNA_4788 0.70 -0.0
1,015,803 - 13156 mRNA_4788 0.83 +1.6
1,015,927 + +0.0
1,016,097 - -0.3
1,016,099 - -0.2
1,016,203 + +0.7
1,016,222 + -0.8
1,016,251 + -0.8

Or see this region's nucleotide sequence