Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4801

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13168 and 13169 are separated by 90 nucleotides13169 and 13170 are separated by 265 nucleotides mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1,042,845 to 1,046,169 13168 mRNA_4801: 13169 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1,046,260 to 1,047,966 13169 mRNA_4802: 13170 - K09313 CUTL homeobox protein cut-like, at 1,048,232 to 1,051,035 13170

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,045,307 + 13168 mRNA_4800 0.74 +1.7
1,045,587 - 13168 mRNA_4800 0.82 -0.2
1,045,646 + 13168 mRNA_4800 0.84 +0.2
1,045,881 + -0.6
1,045,895 + +0.1
1,046,015 - -0.2
1,046,143 + +0.1
1,046,170 + -0.6
1,046,297 - +1.4
1,046,299 - +2.8
1,047,022 - 13169 mRNA_4801 0.45 +1.4
1,047,039 + 13169 mRNA_4801 0.46 +2.6
1,047,739 + 13169 mRNA_4801 0.87 +0.7
1,047,895 + +0.4
1,047,989 - +0.1
1,048,031 - -0.5
1,048,042 + +0.1
1,048,045 + +1.4
1,048,048 + +1.5
1,048,344 - +1.1
1,048,361 + -0.0
1,048,483 - -0.2
1,048,504 - +1.2
1,048,643 + 13170 mRNA_4802 0.15 +1.5
1,048,794 + 13170 mRNA_4802 0.20 +0.3

Or see this region's nucleotide sequence