Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4819

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13186 and 13187 are separated by 316 nucleotides mRNA_4818: 13186 - BLAST Putative BTB domain transcription factor [Penicillium..., at 1,083,889 to 1,085,359 13186 mRNA_4819: 13187 - Hypothetical Protein, at 1,085,676 to 1,087,276 13187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,084,728 + 13186 mRNA_4818 0.57 -0.7
1,084,809 - 13186 mRNA_4818 0.63 +1.0
1,085,154 + 13186 mRNA_4818 0.86 +1.6
1,085,402 + +0.4
1,085,463 - -1.0
1,085,473 + +0.9
1,085,598 + +0.8
1,085,609 - +0.7
1,085,910 + 13187 mRNA_4819 0.15 -1.3
1,086,199 - 13187 mRNA_4819 0.33 +2.0
1,086,334 - 13187 mRNA_4819 0.41 +1.6
1,086,629 - 13187 mRNA_4819 0.60 -1.8
1,086,745 - 13187 mRNA_4819 0.67 -0.0
1,087,061 - 13187 mRNA_4819 0.87 +2.0
1,087,119 - +0.2
1,087,381 - +1.9
1,087,400 - +0.6
1,087,409 - -0.3
1,087,546 + -0.4
1,087,681 + +2.4
1,087,815 - +0.9
1,087,976 + +1.2
1,087,978 + -0.8
1,088,094 + -1.7
1,088,271 - +0.8

Or see this region's nucleotide sequence