Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4848

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13215 and 13216 are separated by 50 nucleotides13216 and 13217 are separated by 192 nucleotides mRNA_4847: 13215 - Hypothetical Protein, at 1,133,572 to 1,137,413 13215 mRNA_4848: 13216 - Hypothetical Protein, at 1,137,464 to 1,141,122 13216 mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1,141,315 to 1,143,566 13217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,136,914 + 13215 mRNA_4847 0.87 -0.5
1,136,914 + 13215 mRNA_4847 0.87 -0.1
1,136,917 + 13215 mRNA_4847 0.87 -0.5
1,137,042 - +0.7
1,137,058 + -0.2
1,137,072 - +1.9
1,137,087 + +0.3
1,137,158 + -0.1
1,137,196 - +1.3
1,137,204 + -0.1
1,137,215 + +0.7
1,137,235 + +1.2
1,137,336 - +0.2
1,137,347 - +0.5
1,137,533 + -0.6
1,137,632 - +0.2
1,137,903 - 13216 mRNA_4848 0.12 +2.0
1,137,920 - 13216 mRNA_4848 0.12 +0.2
1,137,925 + 13216 mRNA_4848 0.13 +0.5
1,138,065 - 13216 mRNA_4848 0.16 +0.7
1,138,077 + 13216 mRNA_4848 0.17 +1.5
1,138,083 - 13216 mRNA_4848 0.17 +0.0
1,138,165 + 13216 mRNA_4848 0.19 +0.2
1,138,165 - 13216 mRNA_4848 0.19 -0.4
1,138,231 + 13216 mRNA_4848 0.21 +0.1
1,138,350 + 13216 mRNA_4848 0.24 +0.0
1,138,513 - 13216 mRNA_4848 0.29 +0.7
1,138,513 + 13216 mRNA_4848 0.29 -0.6
1,138,646 + 13216 mRNA_4848 0.32 +0.9
1,139,098 - 13216 mRNA_4848 0.45 +1.6
1,139,112 + 13216 mRNA_4848 0.45 -0.2
1,139,220 - 13216 mRNA_4848 0.48 +1.2
1,139,269 + 13216 mRNA_4848 0.49 -0.7
1,139,436 + 13216 mRNA_4848 0.54 +0.7
1,139,439 - 13216 mRNA_4848 0.54 +1.0
1,139,460 - 13216 mRNA_4848 0.55 +0.1
1,139,508 - 13216 mRNA_4848 0.56 +0.0
1,139,685 + 13216 mRNA_4848 0.61 -1.2
1,139,702 + 13216 mRNA_4848 0.61 +0.4
1,139,714 - 13216 mRNA_4848 0.61 -0.1
1,139,856 - 13216 mRNA_4848 0.65 +1.6
1,139,857 + 13216 mRNA_4848 0.65 +0.3
1,139,861 + 13216 mRNA_4848 0.66 +0.7
1,140,135 - 13216 mRNA_4848 0.73 +0.7
1,140,235 + 13216 mRNA_4848 0.76 +0.1
1,140,243 + 13216 mRNA_4848 0.76 +0.7
1,140,357 - 13216 mRNA_4848 0.79 +1.3
1,140,542 + 13216 mRNA_4848 0.84 -0.3
1,140,584 - 13216 mRNA_4848 0.85 +1.2
1,140,968 - +0.7
1,140,975 - +0.3
1,140,998 - -0.4
1,141,117 + +1.3
1,142,008 + 13217 mRNA_4849 0.31 +0.4

Or see this region's nucleotide sequence