Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4876

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13243 and 13244 are separated by 797 nucleotides13244 and 13245 are separated by 543 nucleotides mRNA_4875: 13243 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,195,483 to 1,197,426 13243 mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1,198,224 to 1,200,676 13244 mRNA_4877: 13245 - KOG2533 Permease of the major facilitator superfamily, at 1,201,220 to 1,203,456 13245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,197,503 - -0.3
1,197,639 + -0.2
1,197,642 - -0.5
1,197,655 + +0.9
1,197,782 - +1.8
1,197,792 - +2.1
1,197,802 - +0.8
1,197,937 - +2.2
1,197,951 + +0.3
1,197,955 - +0.2
1,197,974 + +0.9
1,198,865 - 13244 mRNA_4876 0.26 +1.4
1,199,396 - 13244 mRNA_4876 0.48 +0.4
1,199,407 + 13244 mRNA_4876 0.48 +0.5
1,199,852 - 13244 mRNA_4876 0.66 +0.2
1,199,859 + 13244 mRNA_4876 0.67 -0.1
1,199,980 + 13244 mRNA_4876 0.72 +1.8
1,200,285 + 13244 mRNA_4876 0.84 +0.9
1,200,420 - 13244 mRNA_4876 0.90 +1.2
1,200,546 + +0.3
1,200,554 + -1.1
1,200,566 + +0.4
1,200,716 - +2.4
1,200,873 - +0.5
1,201,006 + +1.1
1,201,010 + -0.4
1,201,204 + -0.8

Or see this region's nucleotide sequence