Experiment: 40 hrs Median Buoyancy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertions' strand.
Conventionally, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
13269 and 13270 are separated by 439 nucleotides 13270 and 13271 are separated by 118 nucleotides 13271 and 13272 are separated by 143 nucleotides
mRNA_4901: 13269 - K03163 TOP1 DNA topoisomerase I, at 1,259,473 to 1,262,647
13269
mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,263,087 to 1,265,892
13270
mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1,266,011 to 1,266,275
13271
mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1,266,419 to 1,270,865
13272
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Per-strain Table Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy remove 1,262,221 - 13269 mRNA_4901 0.87 -0.6 1,262,683 + +0.2 1,262,744 - +1.0 1,262,835 - -0.3 1,262,849 - -0.1 1,262,850 + -1.0 1,262,968 - -2.4 1,262,980 + -0.8 1,262,981 + +1.4 1,262,983 - +0.3 1,262,986 + +0.1 1,262,993 - -0.2 1,263,021 - +0.4 1,263,036 + -0.7 1,263,170 - -0.9 1,263,297 - +0.2 1,263,333 + +0.0 1,263,462 - 13270 mRNA_4902 0.13 +0.3 1,263,598 + 13270 mRNA_4902 0.18 +0.9 1,263,763 - 13270 mRNA_4902 0.24 -0.1 1,263,827 + 13270 mRNA_4902 0.26 +0.3 1,263,885 - 13270 mRNA_4902 0.28 +1.5 1,263,904 - 13270 mRNA_4902 0.29 -0.4 1,264,032 - 13270 mRNA_4902 0.34 +0.1 1,264,058 + 13270 mRNA_4902 0.35 +1.5 1,264,502 + 13270 mRNA_4902 0.50 +0.4 1,264,697 - 13270 mRNA_4902 0.57 -1.7 1,265,087 - 13270 mRNA_4902 0.71 -0.4 1,265,329 + 13270 mRNA_4902 0.80 +0.6 1,265,512 + 13270 mRNA_4902 0.86 +0.1 1,265,513 + 13270 mRNA_4902 0.86 +0.3 1,265,636 - +1.1 1,265,653 - -0.5 1,265,658 - -1.2 1,265,913 - +0.9 1,266,410 - +0.1 1,266,508 + +0.2 1,266,549 + +0.0 1,266,656 - -0.4 1,266,665 - +0.7 1,266,677 - -0.0
Or see this region's nucleotide sequence