Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4961

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13328 and 13329 are separated by 351 nucleotides mRNA_4960: 13328 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 1,410,723 to 1,413,349 13328 mRNA_4961: 13329 - Hypothetical Protein, at 1,413,701 to 1,414,806 13329

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,412,970 + 13328 mRNA_4960 0.86 +1.3
1,412,971 - 13328 mRNA_4960 0.86 +0.7
1,413,032 - 13328 mRNA_4960 0.88 +0.1
1,413,106 - +2.1
1,413,108 - +0.2
1,413,124 - +0.6
1,413,240 - -0.6
1,413,258 + +0.5
1,413,262 + +0.3
1,413,290 - +2.0
1,413,401 + +0.5
1,413,401 - -0.1
1,413,409 + +0.5
1,413,439 - -0.0
1,414,600 - 13329 mRNA_4961 0.81 -1.2
1,414,765 + +0.9
1,415,043 - +0.9
1,415,052 + +0.1

Or see this region's nucleotide sequence