Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4970

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13337 and 13338 are separated by 426 nucleotides mRNA_4969: 13337 - K20456 OSBP oxysterol-binding protein 1, at 1,435,085 to 1,439,408 13337 mRNA_4970: 13338 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,439,835 to 1,441,343 13338

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,439,114 - +0.5
1,439,117 + +0.4
1,439,128 + -0.5
1,439,137 + +1.8
1,439,179 + -0.1
1,439,280 + +0.7
1,439,280 + -0.2
1,439,351 - +0.7
1,439,415 - +0.8
1,439,564 + -0.0
1,439,606 + -0.1
1,439,721 + +0.7
1,439,838 + -0.3
1,439,865 + -0.3
1,440,294 - 13338 mRNA_4970 0.30 -0.1
1,440,728 + 13338 mRNA_4970 0.59 -0.8
1,440,905 - 13338 mRNA_4970 0.71 +0.2
1,440,986 - 13338 mRNA_4970 0.76 +1.3
1,440,989 + 13338 mRNA_4970 0.76 +1.9
1,441,085 + 13338 mRNA_4970 0.83 +0.2
1,441,168 - 13338 mRNA_4970 0.88 -0.1
1,441,168 - 13338 mRNA_4970 0.88 -0.5
1,441,171 - 13338 mRNA_4970 0.89 -0.1
1,441,176 + 13338 mRNA_4970 0.89 +1.3
1,441,177 - 13338 mRNA_4970 0.89 +0.1
1,441,177 + 13338 mRNA_4970 0.89 +0.7
1,441,181 + 13338 mRNA_4970 0.89 +0.2
1,441,186 + 13338 mRNA_4970 0.90 +1.3
1,441,192 - 13338 mRNA_4970 0.90 +0.4
1,441,198 - +0.9
1,441,202 - +1.4
1,441,302 + +0.1
1,441,303 - -1.4
1,441,305 - +1.1
1,441,308 + +0.7
1,441,327 - +1.1
1,441,333 - +0.0
1,441,351 - -1.1

Or see this region's nucleotide sequence