Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5062

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13429 and 13430 are separated by 68 nucleotides13430 and 13431 are separated by 308 nucleotides mRNA_5061: 13429 - K11414 SIRT4, SIR2L4 NAD-dependent deacetylase sirtuin 4, at 1,661,158 to 1,662,498 13429 mRNA_5062: 13430 - HMMPfam-Zinc-binding-PF12907,SUPERFAMILY--SSF118359, at 1,662,567 to 1,663,555 13430 mRNA_5063: 13431 - K10301 FBXO21 F-box protein 21, at 1,663,864 to 1,665,707 13431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,661,611 - 13429 mRNA_5061 0.34 +0.1
1,661,634 + 13429 mRNA_5061 0.35 +0.3
1,661,817 - 13429 mRNA_5061 0.49 +0.8
1,661,937 - 13429 mRNA_5061 0.58 +0.3
1,662,074 + 13429 mRNA_5061 0.68 +0.6
1,662,474 - +0.4
1,662,482 - -0.2
1,662,493 + +0.2
1,662,643 + -1.6
1,662,740 - 13430 mRNA_5062 0.17 +2.2
1,662,764 - 13430 mRNA_5062 0.20 +0.1
1,662,769 - 13430 mRNA_5062 0.20 +1.1
1,662,770 - 13430 mRNA_5062 0.21 -0.2
1,662,784 + 13430 mRNA_5062 0.22 +0.7
1,662,797 - 13430 mRNA_5062 0.23 +0.9
1,662,955 + 13430 mRNA_5062 0.39 +0.2
1,663,085 + 13430 mRNA_5062 0.52 -0.4
1,663,494 - -0.8
1,663,516 - -0.1
1,663,649 - +0.8
1,663,936 + -0.6
1,663,941 + -0.2
1,664,078 - 13431 mRNA_5063 0.12 +1.9
1,664,079 - 13431 mRNA_5063 0.12 -0.4
1,664,087 - 13431 mRNA_5063 0.12 +2.2
1,664,241 - 13431 mRNA_5063 0.20 +1.6
1,664,540 + 13431 mRNA_5063 0.37 +0.8

Or see this region's nucleotide sequence