Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5077

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13444 and 13445 are separated by 289 nucleotides13445 and 13446 are separated by 685 nucleotides mRNA_5076: 13444 - K00588 E2.1.1.104 caffeoyl-CoA O-methyltransferase, at 1,690,451 to 1,691,745 13444 mRNA_5077: 13445 - KOG1663 O-methyltransferase, at 1,692,035 to 1,693,349 13445 mRNA_5078: 13446 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,694,035 to 1,697,967 13446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,691,046 + 13444 mRNA_5076 0.46 -0.9
1,691,265 - 13444 mRNA_5076 0.63 +0.3
1,691,364 + 13444 mRNA_5076 0.71 +0.3
1,691,365 + 13444 mRNA_5076 0.71 +1.2
1,691,634 + +1.3
1,691,678 + +1.5
1,692,802 + 13445 mRNA_5077 0.58 +2.0
1,692,856 + 13445 mRNA_5077 0.62 +2.0
1,693,105 - 13445 mRNA_5077 0.81 +0.5
1,693,261 + +0.4
1,693,383 - -0.4
1,693,389 - +0.5
1,693,396 - +0.7
1,693,410 + -0.3
1,693,413 - +0.8
1,693,414 - +0.1
1,693,424 + -0.3
1,693,433 + +1.3
1,693,442 + -0.5
1,693,558 - +0.6
1,693,567 - +0.9
1,693,691 - +1.2
1,693,692 + +0.4
1,693,710 + +1.3
1,693,741 - -0.1
1,693,874 + -0.4

Or see this region's nucleotide sequence