Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5144

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13511 and 13512 are separated by 854 nucleotides13512 and 13513 are separated by 449 nucleotides mRNA_5143: 13511 - K12763 SOK2 protein SOK2, at 4,212 to 7,292 13511 mRNA_5144: 13512 - BLAST putative mit domain-containing protein [Erysiphe neca..., at 8,147 to 8,373 13512 mRNA_5145: 13513 - Hypothetical Protein, at 8,823 to 11,115 13513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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7,151 - +0.3
7,151 - +1.9
7,151 - -1.9
7,152 + -0.0
7,157 + -0.8
7,157 + -1.7
7,157 + -0.6
7,404 - +0.5
7,405 - -0.1
7,410 + -0.1
7,547 - -0.4
7,889 - -0.0
8,019 - +1.1
8,069 + +0.8
8,108 + +1.3
8,267 - 13512 mRNA_5144 0.53 +2.0
8,396 + +0.1
8,651 + +0.2
8,952 - -0.4
9,234 + 13513 mRNA_5145 0.18 -0.2

Or see this region's nucleotide sequence