Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5160

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13527 and 13528 are separated by 545 nucleotides mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543 13527 mRNA_5160: 13528 - Hypothetical Protein, at 43,089 to 43,847 13528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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42,119 + 13527 mRNA_5159 0.63 +2.1
42,256 + 13527 mRNA_5159 0.75 +0.7
42,275 + 13527 mRNA_5159 0.77 +1.1
42,286 + 13527 mRNA_5159 0.78 -0.5
42,296 + 13527 mRNA_5159 0.79 +0.2
42,320 - 13527 mRNA_5159 0.81 +0.3
42,555 + +0.6
42,721 - +0.7
43,332 - 13528 mRNA_5160 0.32 +1.8
43,503 - 13528 mRNA_5160 0.55 +0.9
43,550 + 13528 mRNA_5160 0.61 -0.5
43,749 - 13528 mRNA_5160 0.87 -0.2
43,918 + -0.6
44,101 + +0.7
44,201 + -0.3
44,489 + -0.0
44,503 + -0.2
44,588 + +0.6
44,746 - +0.5
44,772 - +0.7
44,822 + -0.6
44,823 + +0.2

Or see this region's nucleotide sequence