Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5167

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13534 and 13535 are separated by 561 nucleotides mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53,307 to 58,220 13534 mRNA_5167: 13535 - Hypothetical Protein, at 58,782 to 59,470 13535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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57,858 - -0.1
57,867 + +0.4
57,896 + -0.2
58,295 - +0.2
58,464 + +0.0
58,586 - +1.1
58,589 - -0.4
58,613 - -1.8
58,633 - +0.6
58,734 + +0.5
59,032 - 13535 mRNA_5167 0.36 +0.1
59,174 + 13535 mRNA_5167 0.57 +1.0
59,187 + 13535 mRNA_5167 0.59 -0.2
59,189 + 13535 mRNA_5167 0.59 -1.1
59,350 + 13535 mRNA_5167 0.82 +1.1
59,461 + -0.6
59,493 - -0.4
59,495 - +0.4
59,647 - +0.2
59,656 - +0.4
59,658 - +0.1
59,687 - +0.0
59,691 - +0.1
59,723 - +1.2
59,794 - +0.1
59,803 - -0.2
59,955 - +0.9
60,199 - +0.7
60,240 + -0.1
60,250 - +0.7
60,289 + -1.1

Or see this region's nucleotide sequence