Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5214

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13581 and 13582 are separated by 194 nucleotides13582 and 13583 are separated by 146 nucleotides mRNA_5213: 13581 - Hypothetical Protein, at 163,193 to 164,200 13581 mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164,395 to 166,467 13582 mRNA_5215: 13583 - KOG1940 Zn-finger protein, at 166,614 to 167,435 13583

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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163,453 - 13581 mRNA_5213 0.26 +1.5
163,668 + 13581 mRNA_5213 0.47 +0.8
163,734 + 13581 mRNA_5213 0.54 +0.9
163,948 + 13581 mRNA_5213 0.75 -0.1
163,995 + 13581 mRNA_5213 0.80 +0.5
164,058 + 13581 mRNA_5213 0.86 +0.7
164,492 - -0.2
164,788 + 13582 mRNA_5214 0.19 +1.3
164,857 - 13582 mRNA_5214 0.22 -0.5
164,941 - 13582 mRNA_5214 0.26 -0.1
164,967 - 13582 mRNA_5214 0.28 -0.1
164,995 + 13582 mRNA_5214 0.29 -1.6
165,243 - 13582 mRNA_5214 0.41 -0.9
165,701 - 13582 mRNA_5214 0.63 +0.2
165,858 + 13582 mRNA_5214 0.71 +1.8
165,948 + 13582 mRNA_5214 0.75 -0.8
166,072 + 13582 mRNA_5214 0.81 -0.4
166,118 - 13582 mRNA_5214 0.83 +0.0
166,235 + 13582 mRNA_5214 0.89 -0.2
166,253 - 13582 mRNA_5214 0.90 +0.2
166,276 - +0.4
166,355 + +1.1
166,394 + -0.4
166,407 + -0.4
166,408 + +0.8
166,755 + 13583 mRNA_5215 0.17 +0.6
167,243 + 13583 mRNA_5215 0.77 -0.5

Or see this region's nucleotide sequence