Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5228

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13595 and 13596 are separated by 370 nucleotides13596 and 13597 are separated by 117 nucleotides mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201,689 to 202,738 13595 mRNA_5228: 13596 - HMMPfam-Mis6-PF07778, at 203,109 to 206,278 13596 mRNA_5229: 13597 - SUPERFAMILY--SSF51445, at 206,396 to 208,003 13597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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202,754 + -0.6
203,081 + +2.5
203,087 + -0.6
203,163 - +0.2
203,200 + +0.8
203,215 - -1.2
203,309 + -0.0
203,492 - 13596 mRNA_5228 0.12 -0.1
203,678 - 13596 mRNA_5228 0.18 +1.9
203,791 + 13596 mRNA_5228 0.22 +1.7
203,959 - 13596 mRNA_5228 0.27 +0.4
203,987 + 13596 mRNA_5228 0.28 -0.3
204,266 + 13596 mRNA_5228 0.36 +0.8
204,823 - 13596 mRNA_5228 0.54 -0.2
205,075 - 13596 mRNA_5228 0.62 +1.8
205,120 + 13596 mRNA_5228 0.63 +0.6
205,261 - 13596 mRNA_5228 0.68 -1.4
205,292 + 13596 mRNA_5228 0.69 +1.7
205,429 + 13596 mRNA_5228 0.73 +1.1
205,432 - 13596 mRNA_5228 0.73 +1.4
205,515 - 13596 mRNA_5228 0.76 +1.6
205,523 + 13596 mRNA_5228 0.76 +0.3
205,531 + 13596 mRNA_5228 0.76 -0.8
205,782 - 13596 mRNA_5228 0.84 -1.4
205,828 - 13596 mRNA_5228 0.86 +1.0
205,876 + 13596 mRNA_5228 0.87 +1.0
206,078 - +1.1
206,100 + -0.1
206,135 - +0.3
206,140 + +1.8
206,250 - -0.9
206,252 - +0.4
206,414 - +1.8
206,416 - -0.5
206,716 - 13597 mRNA_5229 0.20 -0.4
206,752 + 13597 mRNA_5229 0.22 +1.9
206,755 + 13597 mRNA_5229 0.22 +0.1
206,833 - 13597 mRNA_5229 0.27 +0.6
206,863 - 13597 mRNA_5229 0.29 -0.1
206,895 + 13597 mRNA_5229 0.31 -0.4
206,983 - 13597 mRNA_5229 0.37 -1.0
207,125 + 13597 mRNA_5229 0.45 +0.6
207,167 - 13597 mRNA_5229 0.48 +0.0
207,204 + 13597 mRNA_5229 0.50 +0.9

Or see this region's nucleotide sequence