Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5230

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13598 and 13599 are separated by 506 nucleotides mRNA_5230: 13598 - K17906 ATG2 autophagy-related protein 2, at 209,416 to 215,994 13598 mRNA_5231: 13599 - Hypothetical Protein, at 216,501 to 218,178 13599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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208,778 + -1.1
208,793 + -0.5
208,812 + +0.1
208,922 - -0.1
208,964 + -0.3
209,051 + +0.5
209,071 + -0.1
209,076 + +0.2
209,085 + +0.1
209,219 + +1.5
209,327 + +0.9
209,389 - -0.6
209,418 + -2.4
209,521 - -1.4
209,764 - -1.6
209,785 - +0.1
209,790 - +0.7
209,821 - -2.3
209,908 + -1.2
209,932 + -1.1
209,950 - -2.6
209,988 - -1.7
210,057 - -1.7
210,073 + -3.4
210,125 + 13598 mRNA_5230 0.11 -2.3
210,467 + 13598 mRNA_5230 0.16 -2.0
210,659 - 13598 mRNA_5230 0.19 -0.8
210,674 - 13598 mRNA_5230 0.19 -3.0
210,725 - 13598 mRNA_5230 0.20 -1.5
210,768 + 13598 mRNA_5230 0.21 +1.0
210,878 + 13598 mRNA_5230 0.22 -1.4
211,094 - 13598 mRNA_5230 0.26 -1.9
211,098 + 13598 mRNA_5230 0.26 -1.6
211,533 + 13598 mRNA_5230 0.32 -1.6
211,624 + 13598 mRNA_5230 0.34 -1.3
211,629 - 13598 mRNA_5230 0.34 -1.4
211,728 - 13598 mRNA_5230 0.35 -0.4
211,939 - 13598 mRNA_5230 0.38 -1.1
211,942 + 13598 mRNA_5230 0.38 -0.8
212,045 + 13598 mRNA_5230 0.40 -1.4
212,077 + 13598 mRNA_5230 0.40 +1.5
212,209 + 13598 mRNA_5230 0.42 -0.9
212,508 + 13598 mRNA_5230 0.47 -1.0
212,536 + 13598 mRNA_5230 0.47 -1.0
212,848 - 13598 mRNA_5230 0.52 -1.5
212,910 - 13598 mRNA_5230 0.53 -1.4
213,045 + 13598 mRNA_5230 0.55 -1.6
213,103 - 13598 mRNA_5230 0.56 -1.4
213,375 + 13598 mRNA_5230 0.60 -2.2
213,384 - 13598 mRNA_5230 0.60 -1.9
213,768 + 13598 mRNA_5230 0.66 -1.3
213,795 + 13598 mRNA_5230 0.67 -1.0
213,906 + 13598 mRNA_5230 0.68 -1.8
214,375 + 13598 mRNA_5230 0.75 -1.0
214,906 + 13598 mRNA_5230 0.83 -1.9
214,937 + 13598 mRNA_5230 0.84 +1.1
215,355 - -2.6
215,380 - -0.5
215,386 + +1.6
215,573 + -0.1
215,649 + -2.7
215,652 - -2.0
215,807 + -2.0
215,920 + -1.6
215,947 + -0.3
215,952 - +0.1
215,976 + -0.0
216,104 - +1.3
216,216 - +0.0
216,296 + +0.1
216,375 - +1.0
216,378 + +0.2
216,423 + +0.7
216,429 - -0.1
216,579 + -1.1
216,673 + 13599 mRNA_5231 0.10 +0.2
216,705 - 13599 mRNA_5231 0.12 -0.6
216,812 + 13599 mRNA_5231 0.19 +0.1

Or see this region's nucleotide sequence