Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5246

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13613 and 13614 are separated by 222 nucleotides13614 and 13615 are separated by 296 nucleotides mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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254,603 - 13613 mRNA_5245 0.70 +1.2
254,754 + 13613 mRNA_5245 0.86 +2.2
254,912 - +0.1
254,914 + +0.2
254,985 - +2.0
255,027 + +0.3
255,061 + -0.1
255,062 + -0.5
255,073 - +0.1
255,074 + +0.4
255,082 - +1.1
255,094 + +0.6
255,105 + +1.0
255,354 - 13614 mRNA_5246 0.16 -0.0
256,671 - -0.8
256,993 + +1.5
257,005 - +1.1
257,555 - 13615 mRNA_5247 0.54 -0.7
257,584 - 13615 mRNA_5247 0.57 +0.5

Or see this region's nucleotide sequence