Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5249

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13616 and 13617 are separated by 449 nucleotides mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628 13617

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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259,722 + 13616 mRNA_5248 0.64 +0.6
259,896 - 13616 mRNA_5248 0.77 -0.3
259,934 - 13616 mRNA_5248 0.80 +1.0
259,945 - 13616 mRNA_5248 0.81 -0.2
259,983 + 13616 mRNA_5248 0.84 +0.3
260,019 - 13616 mRNA_5248 0.86 -0.5
260,080 + +0.7
260,084 + +0.6
260,088 + +0.1
260,239 - -0.4
260,348 - -0.2
260,364 - -2.4
260,390 + +1.1
260,516 + +0.4
260,553 + -0.7
264,249 - -1.4
264,671 - +0.2
264,673 - +2.4
264,675 + +0.0
264,677 - +1.8
264,680 + +2.4
264,684 - +0.5
264,685 + +0.0
264,685 - +0.3
264,686 + -0.1
264,687 - +0.6
264,691 - +1.2
264,695 - +1.0
264,698 - +0.7
264,701 - +0.1
264,705 + -0.9
264,706 - +0.2
264,709 + +0.4
264,712 - +0.3
264,713 - -0.3
264,714 + +0.3
264,716 - +0.4
264,726 + +0.6
264,728 - +1.4
264,732 - +0.4
264,738 + +1.0
264,740 - +2.0
264,740 + -0.1
264,753 + +0.2
264,757 - +0.1
264,773 + +0.1
264,773 - +1.3
264,784 + +0.7
264,796 + +0.9
264,806 - -0.5
264,836 - -0.2
264,846 - +0.3
264,847 - +0.1
264,849 - +0.1
264,853 + -0.2
264,854 - -0.6
264,857 - +1.0
264,858 - +1.4
264,858 + +1.0
264,859 - -0.6
264,869 - -1.6
264,870 - +0.3
264,870 - +0.1
264,871 - +0.1
264,872 + -0.3
264,874 - -0.1
264,874 - +0.9
264,875 - +0.7
264,878 - -0.1
264,879 + -1.3
264,881 + +0.4
264,881 + +0.3
264,888 - +1.1
264,889 - +0.1
264,890 - -0.5
264,891 + +1.5
264,892 + -1.2
264,893 - -0.3
264,893 - +1.7
264,894 + -0.5
264,894 + +0.3
264,895 - +0.8
264,900 + -0.0
264,902 - -0.4
264,902 + +0.3
264,906 + +0.0
264,907 - -0.1
264,909 + +0.1
264,911 - -1.7
264,929 + +0.7
264,948 - +0.0
264,948 - +0.2
264,948 - +1.4
264,948 - -0.3
264,952 + +1.6
264,956 - +1.0
264,957 + -1.0
264,971 - -0.1
264,971 - -0.5
264,971 - +2.3
264,971 - -0.1
264,972 + -0.2
264,974 + +0.6
264,976 - +0.0
264,979 + +0.2
264,979 + -0.0
264,981 - -0.1
264,982 + +2.5
264,983 - +0.6
264,983 + +0.5
264,986 + -0.2
264,986 + +1.9
264,986 + +0.9
264,988 - +2.4
264,993 - +0.5
265,030 + +0.3
265,041 - +1.3
265,118 + +1.9
265,125 + +1.6
265,139 + +2.1
265,146 + +2.1
265,150 + -0.0
265,157 - +0.8
265,160 - -0.4
265,165 + -0.2
265,172 + -0.4
265,174 - +0.4
265,175 - +0.6
265,176 + -0.6
265,176 - +1.0
265,189 - -0.0
265,203 + -0.4
265,218 - -0.1
265,228 - -0.5
265,233 + +0.8
265,236 + -0.7
265,272 - +0.2
265,319 - +1.1
265,322 + +1.0
265,329 - -1.5
265,340 + -0.5
265,351 + -0.0
265,363 + +2.3
265,433 - +0.7
265,441 + +1.2
265,453 - -0.3
265,457 - -1.5
265,459 + -1.0
265,461 - +2.2
265,462 - -1.5
265,464 - +2.2
265,465 - +0.4
265,469 + -0.4
265,471 + -0.0
265,472 - +0.2
265,478 - +0.1
265,481 + -1.1
265,484 + +1.8
265,485 + +0.2
265,486 + -0.3
265,488 + +0.5
265,498 - -0.8
265,503 - -0.5
265,509 + +0.1
265,510 - +2.0
265,510 - +0.1
265,520 + -0.1
265,521 + +1.4
265,525 + -0.9
265,530 - -0.8
265,531 - +0.7
265,532 - -0.7
265,534 + +1.7
265,535 - -0.2
265,536 + -0.1
265,542 + +0.2
265,548 + +1.1
265,548 - -0.7
265,592 - -1.1
265,597 - +1.2
265,603 + +0.8
265,604 - +0.3
265,606 + +1.4
265,608 - +1.5
265,622 + +1.4

Or see this region's nucleotide sequence