Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5273

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13640 and 13641 are separated by 438 nucleotides13641 and 13642 are separated by 346 nucleotides mRNA_5272: 13640 - K02731 PSMA7 20S proteasome subunit alpha 4, at 330,546 to 332,091 13640 mRNA_5273: 13641 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 332,530 to 334,206 13641 mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334,553 to 337,184 13642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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332,275 - +0.4
332,380 - -2.4
332,534 - -1.9
332,644 + +0.2
332,644 - -0.6
332,679 - +0.5
332,740 + 13641 mRNA_5273 0.13 +0.9
332,749 + 13641 mRNA_5273 0.13 -1.1
332,849 + 13641 mRNA_5273 0.19 +0.5
333,070 + 13641 mRNA_5273 0.32 +0.9
333,393 - 13641 mRNA_5273 0.51 -1.8
333,494 - 13641 mRNA_5273 0.57 +0.1
333,675 - 13641 mRNA_5273 0.68 -0.9
333,689 + 13641 mRNA_5273 0.69 +1.2
334,097 - -0.8
334,292 - -0.9
334,311 - +0.4
334,345 + +1.4
334,383 - -0.1
334,385 + +0.6
334,432 + +1.6
334,574 - +0.1
334,584 + -0.6
334,590 - +1.2
334,732 - -0.4
334,994 - 13642 mRNA_5274 0.17 +0.8

Or see this region's nucleotide sequence