Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5276

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13643 and 13644 are separated by 920 nucleotides13644 and 13645 are separated by 156 nucleotides mRNA_5275: 13643 - K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C, at 337,519 to 338,338 13643 mRNA_5276: 13644 - Hypothetical Protein, at 339,259 to 340,241 13644 mRNA_5277: 13645 - Hypothetical Protein, at 340,398 to 341,217 13645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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338,260 + +0.4
338,265 - -0.4
338,294 - +0.0
338,391 + +1.6
338,417 + -0.2
338,552 - -0.5
338,649 + +2.4
338,693 + +2.6
338,709 + -0.4
338,733 - +1.6
338,792 + -0.8
338,795 + +0.3
338,849 + +0.1
338,853 - +0.7
338,946 - +1.4
338,987 - -0.4
338,994 + +0.4
338,998 - -0.5
339,006 + +0.1
339,276 - +0.6
339,293 - -0.3
339,855 - 13644 mRNA_5276 0.61 +0.5
339,856 - 13644 mRNA_5276 0.61 -1.4
339,856 - 13644 mRNA_5276 0.61 +0.3
339,861 + 13644 mRNA_5276 0.61 +0.2
339,861 + 13644 mRNA_5276 0.61 -0.3
339,862 + 13644 mRNA_5276 0.61 +0.1
339,864 - 13644 mRNA_5276 0.62 +1.0
339,927 + 13644 mRNA_5276 0.68 +1.6
340,119 + 13644 mRNA_5276 0.87 -1.7
340,313 - -0.4
340,454 + +0.9
340,479 - +0.0
340,480 - 13645 mRNA_5277 0.10 -0.6
340,564 - 13645 mRNA_5277 0.20 +0.0
340,675 - 13645 mRNA_5277 0.34 -2.1
340,723 - 13645 mRNA_5277 0.40 -0.5
341,050 - 13645 mRNA_5277 0.80 +0.6
341,117 + 13645 mRNA_5277 0.88 -0.1

Or see this region's nucleotide sequence