Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5277

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13644 and 13645 are separated by 156 nucleotides13645 and 13646 are separated by 274 nucleotides mRNA_5276: 13644 - Hypothetical Protein, at 339,259 to 340,241 13644 mRNA_5277: 13645 - Hypothetical Protein, at 340,398 to 341,217 13645 mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341,492 to 344,533 13646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,855 - 13644 mRNA_5276 0.61 +0.5
339,856 - 13644 mRNA_5276 0.61 -1.4
339,856 - 13644 mRNA_5276 0.61 +0.3
339,861 + 13644 mRNA_5276 0.61 +0.2
339,861 + 13644 mRNA_5276 0.61 -0.3
339,862 + 13644 mRNA_5276 0.61 +0.1
339,864 - 13644 mRNA_5276 0.62 +1.0
339,927 + 13644 mRNA_5276 0.68 +1.6
340,119 + 13644 mRNA_5276 0.87 -1.7
340,313 - -0.4
340,454 + +0.9
340,479 - +0.0
340,480 - 13645 mRNA_5277 0.10 -0.6
340,564 - 13645 mRNA_5277 0.20 +0.0
340,675 - 13645 mRNA_5277 0.34 -2.1
340,723 - 13645 mRNA_5277 0.40 -0.5
341,050 - 13645 mRNA_5277 0.80 +0.6
341,117 + 13645 mRNA_5277 0.88 -0.1
341,592 - -0.9
341,682 + -2.4
341,972 + 13646 mRNA_5278 0.16 +1.0

Or see this region's nucleotide sequence