Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5336

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13703 and 13704 are separated by 279 nucleotides13704 and 13705 are separated by 215 nucleotides mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482,937 to 484,688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484,904 to 487,998 13705

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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481,955 + 13703 mRNA_5335 0.32 -1.8
482,031 - 13703 mRNA_5335 0.39 +0.6
482,554 + 13703 mRNA_5335 0.90 -0.5
482,558 - -0.1
482,590 - +1.7
482,818 - +2.3
482,833 - -0.0
482,867 - -0.6
484,905 - -1.2
485,157 - +0.1
485,197 + -0.7
485,329 + 13705 mRNA_5337 0.14 -0.5
485,347 + 13705 mRNA_5337 0.14 -0.2
485,389 - 13705 mRNA_5337 0.16 -0.2
485,565 - 13705 mRNA_5337 0.21 -0.2
485,646 + 13705 mRNA_5337 0.24 -0.0

Or see this region's nucleotide sequence