Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5346

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13713 and 13714 are separated by 233 nucleotides13714 and 13715 are separated by 889 nucleotides mRNA_5345: 13713 - Hypothetical Protein, at 503,371 to 504,560 13713 mRNA_5346: 13714 - HMMPfam-Hamartin protein-PF04388, at 504,794 to 508,994 13714 mRNA_5347: 13715 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 509,884 to 511,420 13715

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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504,687 + -0.9
504,814 + -0.2
504,990 - -0.2
504,998 + +0.3
505,227 + 13714 mRNA_5346 0.10 +1.7
505,279 - 13714 mRNA_5346 0.12 -0.3
505,302 + 13714 mRNA_5346 0.12 +2.0
505,365 + 13714 mRNA_5346 0.14 +0.7
505,410 - 13714 mRNA_5346 0.15 +1.9
505,416 - 13714 mRNA_5346 0.15 -0.0
505,422 - 13714 mRNA_5346 0.15 +0.2
505,429 + 13714 mRNA_5346 0.15 +1.0
505,439 - 13714 mRNA_5346 0.15 +0.2
505,445 - 13714 mRNA_5346 0.15 +0.5
505,452 - 13714 mRNA_5346 0.16 +0.2
505,455 + 13714 mRNA_5346 0.16 +0.0
505,469 + 13714 mRNA_5346 0.16 -0.6
505,472 - 13714 mRNA_5346 0.16 +0.9
505,474 - 13714 mRNA_5346 0.16 +0.5
505,484 + 13714 mRNA_5346 0.16 +0.1
505,488 + 13714 mRNA_5346 0.17 +1.5
505,489 - 13714 mRNA_5346 0.17 +1.1
505,490 + 13714 mRNA_5346 0.17 +0.3
505,491 - 13714 mRNA_5346 0.17 +0.9
505,492 - 13714 mRNA_5346 0.17 -0.6
505,494 + 13714 mRNA_5346 0.17 -0.6
505,495 + 13714 mRNA_5346 0.17 +0.2
505,497 + 13714 mRNA_5346 0.17 +0.0
505,498 + 13714 mRNA_5346 0.17 +1.6
505,499 - 13714 mRNA_5346 0.17 -0.4
505,501 - 13714 mRNA_5346 0.17 -0.5
505,504 - 13714 mRNA_5346 0.17 +0.6
505,541 + 13714 mRNA_5346 0.18 +0.0
505,544 + 13714 mRNA_5346 0.18 -0.1
505,546 + 13714 mRNA_5346 0.18 -0.3
505,547 - 13714 mRNA_5346 0.18 +0.1
505,551 + 13714 mRNA_5346 0.18 +2.9
505,551 - 13714 mRNA_5346 0.18 +1.5
505,553 - 13714 mRNA_5346 0.18 +0.7
505,554 - 13714 mRNA_5346 0.18 -1.3
505,558 + 13714 mRNA_5346 0.18 +0.3
505,559 - 13714 mRNA_5346 0.18 +0.9
505,560 + 13714 mRNA_5346 0.18 +1.1
505,564 + 13714 mRNA_5346 0.18 -1.4
505,564 - 13714 mRNA_5346 0.18 +0.3
505,566 - 13714 mRNA_5346 0.18 -0.6
505,567 + 13714 mRNA_5346 0.18 +1.5
505,572 + 13714 mRNA_5346 0.19 +0.3
505,574 + 13714 mRNA_5346 0.19 -2.0
505,577 + 13714 mRNA_5346 0.19 +2.7
505,579 + 13714 mRNA_5346 0.19 +1.3
505,579 + 13714 mRNA_5346 0.19 -0.4
505,598 + 13714 mRNA_5346 0.19 -0.4
505,613 - 13714 mRNA_5346 0.19 +0.8
505,630 + 13714 mRNA_5346 0.20 +0.7
505,634 + 13714 mRNA_5346 0.20 -1.6
505,635 - 13714 mRNA_5346 0.20 +0.1
505,641 + 13714 mRNA_5346 0.20 +1.2
505,651 + 13714 mRNA_5346 0.20 +1.7
505,799 + 13714 mRNA_5346 0.24 -0.7
505,881 - 13714 mRNA_5346 0.26 -0.6
505,923 + 13714 mRNA_5346 0.27 -2.2
506,061 + 13714 mRNA_5346 0.30 -0.8
508,710 - +0.4
508,937 + +0.5
509,071 - +0.5
509,236 - +0.3
509,251 - +1.5
509,387 - +2.4
509,395 - +0.3
509,526 + +2.0
509,529 + +0.4
509,680 + +0.4
509,704 + -0.5
509,820 - -0.9
509,826 + +1.2
509,989 - -0.4

Or see this region's nucleotide sequence