Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5376

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13743 and 13744 are separated by 124 nucleotides mRNA_5375: 13743 - Hypothetical Protein, at 578,349 to 578,853 13743 mRNA_5376: 13744 - Hypothetical Protein, at 578,978 to 581,367 13744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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578,346 + +1.6
578,494 + 13743 mRNA_5375 0.29 +1.4
578,497 - 13743 mRNA_5375 0.29 +0.6
578,538 - 13743 mRNA_5375 0.37 -0.5
578,678 - 13743 mRNA_5375 0.65 -0.9
578,750 + 13743 mRNA_5375 0.79 +1.1
578,949 + +0.0
579,104 + -0.4
579,256 - 13744 mRNA_5376 0.12 +0.5
579,522 - 13744 mRNA_5376 0.23 +1.3
579,679 + 13744 mRNA_5376 0.29 +0.5
579,759 + 13744 mRNA_5376 0.33 +0.4
579,893 + 13744 mRNA_5376 0.38 -0.8
579,919 - 13744 mRNA_5376 0.39 -0.1
579,938 + 13744 mRNA_5376 0.40 +0.6
579,961 - 13744 mRNA_5376 0.41 +0.2
580,084 + 13744 mRNA_5376 0.46 -0.6
580,147 - 13744 mRNA_5376 0.49 +0.5
580,234 + 13744 mRNA_5376 0.53 -1.0
580,251 + 13744 mRNA_5376 0.53 -0.1
580,384 + 13744 mRNA_5376 0.59 -0.4
580,472 + 13744 mRNA_5376 0.63 -0.3
580,540 - 13744 mRNA_5376 0.65 +0.6
580,728 - 13744 mRNA_5376 0.73 -2.1
580,747 - 13744 mRNA_5376 0.74 +0.2
580,768 - 13744 mRNA_5376 0.75 -0.5
580,806 + 13744 mRNA_5376 0.76 +1.6
580,808 - 13744 mRNA_5376 0.77 +1.1
580,842 - 13744 mRNA_5376 0.78 -0.1
580,853 + 13744 mRNA_5376 0.78 +0.1
580,877 - 13744 mRNA_5376 0.79 +1.7
580,878 + 13744 mRNA_5376 0.79 +0.2
580,879 - 13744 mRNA_5376 0.80 -0.3
580,906 + 13744 mRNA_5376 0.81 -0.8
580,958 + 13744 mRNA_5376 0.83 -0.6
580,967 + 13744 mRNA_5376 0.83 +0.2
581,123 - 13744 mRNA_5376 0.90 +0.8
581,128 - 13744 mRNA_5376 0.90 -1.0
581,370 - -0.0
581,370 + +0.3
581,371 + +0.1
581,400 - +1.3
581,444 - -0.2

Or see this region's nucleotide sequence