Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1 + +0.5
1 + +0.1
1 + +1.1
1 + +0.9
23 + +1.0
29 + -1.0
29 + -0.1
34 + -0.3
39 + -1.9
39 + +1.6
47 + +0.8
50 + +0.8
50 + -0.2
50 + -1.3
50 + -0.5
50 - -0.2
51 + +0.2
61 + +1.9
62 + -0.3
96 + +2.3
116 + -0.2
158 - +1.9
159 - -0.5
160 - -0.4
169 - +0.2
180 - +1.0
189 + +0.4
198 + -0.8
201 - +1.2
208 - -1.0
210 + -0.2
225 + 13762 mRNA_5394 0.11 +0.6
225 + 13762 mRNA_5394 0.11 +1.7
244 + 13762 mRNA_5394 0.13 +1.6
245 - 13762 mRNA_5394 0.13 -1.1
271 - 13762 mRNA_5394 0.16 -0.7
276 - 13762 mRNA_5394 0.16 -0.7
277 + 13762 mRNA_5394 0.16 +0.8
280 - 13762 mRNA_5394 0.17 +0.3
306 + 13762 mRNA_5394 0.19 +2.2
317 - 13762 mRNA_5394 0.21 +0.7
345 + 13762 mRNA_5394 0.23 +0.4
345 - 13762 mRNA_5394 0.23 -1.9
347 + 13762 mRNA_5394 0.24 +1.6
359 - 13762 mRNA_5394 0.25 -0.4
387 - 13762 mRNA_5394 0.28 -1.5
399 + 13762 mRNA_5394 0.29 +0.9
434 + 13762 mRNA_5394 0.33 +1.5
447 - 13762 mRNA_5394 0.34 +0.7
485 - 13762 mRNA_5394 0.38 -0.4
543 + 13762 mRNA_5394 0.44 -1.2
649 + 13762 mRNA_5394 0.55 -0.1
667 + 13762 mRNA_5394 0.57 -1.9
667 - 13762 mRNA_5394 0.57 -0.4
678 - 13762 mRNA_5394 0.58 -1.1
718 + 13762 mRNA_5394 0.63 -0.1
723 + 13762 mRNA_5394 0.63 +0.3
802 + 13762 mRNA_5394 0.71 +0.0
806 + 13762 mRNA_5394 0.72 +1.4
905 - 13762 mRNA_5394 0.82 -0.1
911 + 13762 mRNA_5394 0.83 +1.1
965 + 13762 mRNA_5394 0.88 -0.2
966 + 13762 mRNA_5394 0.89 -0.5
968 + 13762 mRNA_5394 0.89 +1.4
1,014 - -0.0
1,084 - +1.8
1,103 - +0.3
1,110 + +0.6
1,245 - 13763 mRNA_5395 0.11 +1.7
1,260 - 13763 mRNA_5395 0.13 -1.1
1,376 - 13763 mRNA_5395 0.27 +1.1
1,438 + 13763 mRNA_5395 0.34 +0.5
1,438 + 13763 mRNA_5395 0.34 +0.6
1,438 + 13763 mRNA_5395 0.34 -0.4
1,523 + 13763 mRNA_5395 0.44 -1.7
1,528 - 13763 mRNA_5395 0.45 -0.8
1,533 + 13763 mRNA_5395 0.45 -0.0
1,538 + 13763 mRNA_5395 0.46 +2.3
1,538 - 13763 mRNA_5395 0.46 -0.5
1,556 + 13763 mRNA_5395 0.48 -1.1
1,639 + 13763 mRNA_5395 0.58 +0.2
1,854 - 13763 mRNA_5395 0.83 -0.4
1,855 - 13763 mRNA_5395 0.83 -1.0
1,887 - 13763 mRNA_5395 0.87 +1.3
1,908 - 13763 mRNA_5395 0.89 +1.5
2,000 - +0.1
2,009 + +0.8

Or see this region's nucleotide sequence