Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5426

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13793 and 13794 are separated by 463 nucleotides13794 and 13795 are separated by 322 nucleotides mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70,571 to 72,264 13793 mRNA_5426: 13794 - K06944 K06944 uncharacterized protein, at 72,728 to 74,932 13794 mRNA_5427: 13795 - Hypothetical Protein, at 75,255 to 76,663 13795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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72,379 - -1.0
72,650 + +0.2
72,855 + +1.0
72,976 - 13794 mRNA_5426 0.11 +1.3
73,064 - 13794 mRNA_5426 0.15 +2.8
73,104 - 13794 mRNA_5426 0.17 -0.0
73,138 + 13794 mRNA_5426 0.19 +0.5
73,147 + 13794 mRNA_5426 0.19 +0.9
73,149 - 13794 mRNA_5426 0.19 -0.5
73,220 - 13794 mRNA_5426 0.22 -0.3
73,275 - 13794 mRNA_5426 0.25 -0.2
73,291 + 13794 mRNA_5426 0.26 -1.0
73,297 - 13794 mRNA_5426 0.26 -0.2
73,384 - 13794 mRNA_5426 0.30 -0.7
73,453 - 13794 mRNA_5426 0.33 +0.8
73,529 + 13794 mRNA_5426 0.36 +0.4
73,568 + 13794 mRNA_5426 0.38 +0.2
73,856 + 13794 mRNA_5426 0.51 -1.3
73,988 - 13794 mRNA_5426 0.57 +2.7
74,060 - 13794 mRNA_5426 0.60 -1.8
74,104 - 13794 mRNA_5426 0.62 +0.9
74,154 - 13794 mRNA_5426 0.65 -0.0
74,157 + 13794 mRNA_5426 0.65 +1.0
74,157 + 13794 mRNA_5426 0.65 -0.0
74,166 + 13794 mRNA_5426 0.65 -0.5
74,172 + 13794 mRNA_5426 0.65 -0.3
74,226 + 13794 mRNA_5426 0.68 -0.2
74,231 + 13794 mRNA_5426 0.68 -0.1
74,262 + 13794 mRNA_5426 0.70 +0.2
74,382 - 13794 mRNA_5426 0.75 -0.5
74,603 + 13794 mRNA_5426 0.85 -0.5
74,712 + +1.1
74,846 - -2.2
75,033 - +0.2
75,121 - +0.7
75,124 - -0.9
75,220 - +0.3
75,299 - -0.0
75,345 - +0.6
75,358 - -0.5
75,408 - 13795 mRNA_5427 0.11 +1.0
75,436 - 13795 mRNA_5427 0.13 -0.1
75,568 + 13795 mRNA_5427 0.22 -0.0
75,571 - 13795 mRNA_5427 0.22 -1.8
75,573 - 13795 mRNA_5427 0.23 +1.2
75,666 - 13795 mRNA_5427 0.29 +0.6
75,762 - 13795 mRNA_5427 0.36 -0.7
75,805 - 13795 mRNA_5427 0.39 -0.5

Or see this region's nucleotide sequence