Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5432

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13799 and 13800 are separated by 704 nucleotides13800 and 13801 are separated by 642 nucleotides mRNA_5431: 13799 - KOG1296 Uncharacterized conserved protein, at 84,428 to 85,305 13799 mRNA_5432: 13800 - Hypothetical Protein, at 86,010 to 86,874 13800 mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87,517 to 89,164 13801

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
85,068 - 13799 mRNA_5431 0.73 -0.4
85,069 - 13799 mRNA_5431 0.73 -0.8
85,154 + 13799 mRNA_5431 0.83 +0.7
85,188 - 13799 mRNA_5431 0.87 +0.6
85,331 - +0.3
85,368 - -1.0
85,406 - +1.0
85,508 - +0.6
85,627 + +0.6
85,657 + +2.2
85,973 + +0.2
85,976 - +0.8
86,026 + +0.2
86,091 + -0.4
86,546 + 13800 mRNA_5432 0.62 -1.2
86,668 - 13800 mRNA_5432 0.76 +1.8
86,675 - 13800 mRNA_5432 0.77 +0.6
86,675 + 13800 mRNA_5432 0.77 -0.1
86,776 + 13800 mRNA_5432 0.89 -1.0
86,832 + +1.0
87,750 + 13801 mRNA_5433 0.14 +0.8
87,833 - 13801 mRNA_5433 0.19 -0.4
87,861 + 13801 mRNA_5433 0.21 +0.9
87,871 + 13801 mRNA_5433 0.21 +0.1

Or see this region's nucleotide sequence