Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5459

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13826 and 13827 are separated by 245 nucleotides13827 and 13828 are separated by 453 nucleotides mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135,775 to 137,466 13826 mRNA_5459: 13827 - K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4, at 137,712 to 142,307 13827 mRNA_5460: 13828 - Hypothetical Protein, at 142,761 to 144,304 13828

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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137,584 + +0.2
137,642 - -0.1
137,645 + +1.0
137,694 + +0.0
137,719 + +0.2
138,231 + 13827 mRNA_5459 0.11 +0.4
138,381 + 13827 mRNA_5459 0.15 -0.3
138,669 + 13827 mRNA_5459 0.21 -0.3
138,823 - 13827 mRNA_5459 0.24 -0.7
139,157 - 13827 mRNA_5459 0.31 -0.9
142,477 + +0.1
142,482 + -0.2
142,486 + -0.6
142,658 + +0.2
142,678 + -0.3
142,801 + +1.7
143,078 + 13828 mRNA_5460 0.21 -1.5

Or see this region's nucleotide sequence