Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5461

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13828 and 13829 are separated by 562 nucleotides13829 and 13830 are separated by 331 nucleotides mRNA_5460: 13828 - Hypothetical Protein, at 142,761 to 144,304 13828 mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144,867 to 148,106 13829 mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148,438 to 149,863 13830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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143,902 - 13828 mRNA_5460 0.74 +0.4
144,828 - +0.5
144,832 - +0.7
144,939 + -0.9
145,112 - +1.3
145,132 - +1.2
145,133 + +1.4
145,301 - 13829 mRNA_5461 0.13 +0.9
145,316 - 13829 mRNA_5461 0.14 +0.7
145,388 + 13829 mRNA_5461 0.16 -0.8
145,420 + 13829 mRNA_5461 0.17 -0.7
145,595 - 13829 mRNA_5461 0.22 -0.2
145,714 - 13829 mRNA_5461 0.26 +1.5
145,854 - 13829 mRNA_5461 0.30 +1.8
145,861 + 13829 mRNA_5461 0.31 +0.7
145,999 + 13829 mRNA_5461 0.35 +1.3
146,264 + 13829 mRNA_5461 0.43 +0.8
146,605 + 13829 mRNA_5461 0.54 -0.2
146,701 - 13829 mRNA_5461 0.57 +0.1
146,701 - 13829 mRNA_5461 0.57 -0.4
146,705 + 13829 mRNA_5461 0.57 -0.1
146,850 - 13829 mRNA_5461 0.61 -0.3
146,871 + 13829 mRNA_5461 0.62 +0.1
146,871 - 13829 mRNA_5461 0.62 +0.4
146,877 + 13829 mRNA_5461 0.62 +1.6
147,003 - 13829 mRNA_5461 0.66 +0.2
147,009 + 13829 mRNA_5461 0.66 -2.1
147,022 + 13829 mRNA_5461 0.67 +0.3
147,025 + 13829 mRNA_5461 0.67 -0.2
147,159 - 13829 mRNA_5461 0.71 +1.1
147,284 - 13829 mRNA_5461 0.75 -0.8
147,332 - 13829 mRNA_5461 0.76 +0.1
147,492 - 13829 mRNA_5461 0.81 -0.7
147,583 - 13829 mRNA_5461 0.84 +1.7
147,634 - 13829 mRNA_5461 0.85 -0.7
148,363 + +1.2
148,466 + -0.3
148,498 + -0.6
148,568 - -1.6
148,583 - 13830 mRNA_5462 0.10 +0.2
148,631 + 13830 mRNA_5462 0.14 +0.1
148,702 + 13830 mRNA_5462 0.19 +1.2
148,711 - 13830 mRNA_5462 0.19 +0.5
148,783 + 13830 mRNA_5462 0.24 +0.0
148,815 + 13830 mRNA_5462 0.26 +1.0
148,939 - 13830 mRNA_5462 0.35 +0.2

Or see this region's nucleotide sequence