Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5487

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13854 and 13855 are separated by 537 nucleotides13855 and 13856 are separated by 261 nucleotides mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211,057 to 213,286 13854 mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622 13855 mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214,884 to 216,932 13856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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213,057 + 13854 mRNA_5486 0.90 +0.2
213,510 - +1.0
213,641 + +0.5
213,658 - +0.5
214,062 - 13855 mRNA_5487 0.30 -0.7
214,102 + 13855 mRNA_5487 0.35 -0.6
214,135 + 13855 mRNA_5487 0.39 +1.2
214,201 + 13855 mRNA_5487 0.47 -0.7
214,516 - 13855 mRNA_5487 0.87 -0.1
214,836 - +0.3
214,939 + +1.7
215,062 + +1.1
215,284 + 13856 mRNA_5488 0.20 +1.2
215,408 - 13856 mRNA_5488 0.26 +0.3
215,534 + 13856 mRNA_5488 0.32 -0.1
215,537 - 13856 mRNA_5488 0.32 -0.1

Or see this region's nucleotide sequence