Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5501

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13868 and 13869 are separated by 271 nucleotides13869 and 13870 are separated by 152 nucleotides mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242,489 to 245,110 13868 mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759 13869 mRNA_5502: 13870 - Hypothetical Protein, at 247,912 to 250,557 13870

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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245,091 + +0.6
245,115 + -0.8
245,379 - +0.8
245,406 - -0.9
245,720 + 13869 mRNA_5501 0.14 +0.9
246,392 + 13869 mRNA_5501 0.42 +1.3
246,956 - 13869 mRNA_5501 0.66 +0.3
246,981 - 13869 mRNA_5501 0.67 +0.2
247,272 - 13869 mRNA_5501 0.79 +0.9
247,418 - 13869 mRNA_5501 0.86 -0.4
247,544 - -0.2
247,715 + +0.5
248,332 - 13870 mRNA_5502 0.16 +0.2
248,456 - 13870 mRNA_5502 0.21 +0.3
248,508 + 13870 mRNA_5502 0.23 +0.3

Or see this region's nucleotide sequence