Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5516

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13883 and 13884 are separated by 155 nucleotides mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108 13883 mRNA_5516: 13884 - Hypothetical Protein, at 276,264 to 277,474 13884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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276,177 - +0.3
276,177 - -1.0
276,199 + +3.4
276,230 - +0.4
276,331 + +0.1
276,361 - +0.4
276,382 - -0.4
276,639 + 13884 mRNA_5516 0.31 +1.5
276,906 - 13884 mRNA_5516 0.53 +1.2
276,912 - 13884 mRNA_5516 0.54 -1.3
276,920 + 13884 mRNA_5516 0.54 -0.2
277,142 + 13884 mRNA_5516 0.73 +0.6
277,210 + 13884 mRNA_5516 0.78 -0.1
277,233 - 13884 mRNA_5516 0.80 -1.0
277,357 + +1.8
277,492 + -0.3
277,514 - -0.5
277,775 - +1.3
277,933 - -1.1
278,228 + +0.1
278,232 + +0.8
278,342 + +0.0
278,352 + +1.1
278,379 - +2.1

Or see this region's nucleotide sequence