Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5530

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13898 and 13899 are separated by 635 nucleotides mRNA_5530: 13898 - K02949 RP-S11e, RPS11 small subunit ribosomal protein S11e, at 309,658 to 310,320 13898 mRNA_5531: 13899 - K03800 lplA, lplJ lipoate---protein ligase, at 310,956 to 312,571 13899

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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308,696 - +0.7
308,719 + +0.1
308,735 - +0.9
308,835 - +0.4
308,839 - +0.3
308,846 - -2.4
308,854 - +1.6
308,899 + +3.0
308,976 - +0.3
308,986 - -0.7
308,989 - -0.7
309,008 + -0.2
309,021 - +1.4
309,045 + +0.4
309,096 - -2.7
309,129 - +0.2
309,146 + -0.0
309,199 - -2.4
309,314 - -0.8
310,821 + +0.5
310,826 + +1.2
310,954 - +0.1

Or see this region's nucleotide sequence