Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5561

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13928 and 13929 are separated by 689 nucleotides13929 and 13930 are separated by 200 nucleotides mRNA_5560: 13928 - BLAST PROTEIN D2013.6 [Ceraceosorus bombacis], at 380,962 to 381,944 13928 mRNA_5561: 13929 - Hypothetical Protein, at 382,634 to 383,572 13929 mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383,773 to 385,239 13930

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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381,927 + -0.6
382,093 - +1.1
382,263 + -0.7
382,330 + -0.4
382,902 - 13929 mRNA_5561 0.29 -3.5
383,142 - 13929 mRNA_5561 0.54 +0.5
383,376 + 13929 mRNA_5561 0.79 -0.1
383,408 - 13929 mRNA_5561 0.82 +1.3
383,538 + -0.9
383,568 - +0.7
383,579 + +0.5
383,626 - +0.4
383,642 - +0.9
383,694 + -0.0
383,993 + 13930 mRNA_5562 0.15 +1.9
384,002 - 13930 mRNA_5562 0.16 +2.1
384,252 + 13930 mRNA_5562 0.33 -0.7
384,405 + 13930 mRNA_5562 0.43 -0.3
384,552 + 13930 mRNA_5562 0.53 +0.7
384,555 - 13930 mRNA_5562 0.53 -1.9

Or see this region's nucleotide sequence