Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5573

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13940 and 13941 are separated by 367 nucleotides mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405,680 to 409,565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409,933 to 411,114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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409,527 + +0.2
409,575 - +1.9
409,590 + +0.3
409,598 - -0.3
409,614 + +0.3
409,614 + +1.3
409,617 - +2.7
409,624 + -0.1
409,670 - +1.6
409,696 - +0.2
409,717 - +2.1
409,730 + +1.0
409,755 - -0.3
409,834 - +0.1
409,863 - -2.3
409,939 + +1.3
410,023 + +2.5
410,040 + +0.0
410,115 + 13941 mRNA_5573 0.15 +0.3
410,306 + 13941 mRNA_5573 0.32 -1.0
410,323 + 13941 mRNA_5573 0.33 +1.1
410,562 + 13941 mRNA_5573 0.53 +2.5
410,580 + 13941 mRNA_5573 0.55 +0.1
410,769 + 13941 mRNA_5573 0.71 +0.2
410,799 + 13941 mRNA_5573 0.73 +0.6
410,808 + 13941 mRNA_5573 0.74 -0.9
410,828 - 13941 mRNA_5573 0.76 +0.2
410,852 - 13941 mRNA_5573 0.78 -1.4
410,865 + 13941 mRNA_5573 0.79 -0.4
410,988 + 13941 mRNA_5573 0.89 -1.0
411,001 - -1.9
411,007 + +0.3
411,010 + -0.2
411,036 + +0.6
411,059 - -1.4
411,130 - +1.1
411,136 + +1.2
411,149 - -1.2
411,173 - -0.1
411,180 + +0.8
411,185 + -1.1
411,198 + +0.8
411,198 + -0.8
411,220 - -0.0
411,264 - +1.5
411,269 + +0.5
411,271 + +0.0
411,282 + -1.0
411,288 - -0.2
411,293 + +0.7
411,296 - +0.1
411,307 + +0.6
411,310 - -0.0
411,311 - +0.5
411,312 + +0.0
411,315 + +1.4
411,316 - -0.0
411,317 + -1.3
411,317 + +0.2
411,318 + +0.5
411,319 - -0.9
411,319 + +0.3
411,322 - +0.3
411,328 - -1.5
411,337 - +2.7
411,337 + -1.1
411,338 + -0.4
411,345 - +0.6
411,364 - -0.6
411,368 - +0.5
411,374 - -0.4
411,383 - +0.2
411,388 - +0.4
411,395 + +0.7
411,412 + +0.8
411,416 + +0.7
411,424 - -0.9
411,427 - -0.7
411,433 + +1.7
411,438 - +0.3
411,449 - -0.3
411,453 + -0.8
411,455 - +0.2
411,458 - +0.2
411,465 - +1.9
411,466 - +0.6
411,475 + +0.1
411,482 + +1.2
411,489 - -0.3
411,496 - +1.8
411,503 + -0.3
411,504 - +0.7
411,524 - -1.2
411,531 + -0.3
411,541 - +0.1
411,555 - +0.6
411,569 + +0.9
411,570 - +0.7
411,588 - -0.9
411,600 - +1.5
411,619 + +2.4
411,621 - -1.4
411,646 - +1.0
411,651 - -0.7
411,652 - -1.1
411,652 - +0.4
411,657 + -0.2
411,659 + +0.1
411,659 - +1.7
411,661 - +0.2
411,662 - -0.6
411,663 - +0.9
411,663 - +2.3
411,663 + +0.7
411,666 + +2.4
411,672 + -0.0
411,679 + +0.0
411,683 - +1.2
411,684 + +0.1
411,685 + +0.7
411,685 + +0.1
411,685 - +1.0
411,687 - +1.6
411,690 + -0.0
411,692 + -0.1
411,693 + +0.2
411,697 - -0.6
411,702 + -0.2
411,702 - -0.7
411,703 + +0.7
411,707 + +0.2
411,707 + -0.4
411,711 + +0.4
411,715 + +1.3
411,716 + -0.5
411,723 + -0.3
411,727 - -0.4
411,727 + -0.3
411,729 - +0.2
411,742 - -0.3
411,746 - +0.0
411,751 - +1.0
411,754 - -0.1
411,755 + +0.2
411,756 + +1.4
411,761 + -0.3
411,765 - +0.5
411,773 - +0.8
411,774 + -0.7
411,774 + -0.4
411,775 + -0.1
411,775 + -0.3
411,776 + -0.0
411,776 - -1.3
411,781 - +1.3
411,784 + +1.0
411,785 - -1.1
411,788 - +0.6
411,789 - +0.1
411,795 + +2.2
411,795 - +0.6
411,799 + +0.6
411,799 + +2.4
411,801 - +0.2
411,802 - -0.1
411,802 - -0.8
411,815 - -0.1
411,822 - +2.5
411,826 + +0.5
411,831 + -0.2
411,876 + +0.4
411,932 - -0.0
411,948 - -0.0
411,955 + +0.7
411,959 - -0.4
411,959 + +0.3
411,979 + -0.3
411,980 + +0.5
411,985 - -0.1
411,987 + -0.3
411,989 + -0.6
412,064 + +0.9
412,097 + -0.0
412,097 - +1.9

Or see this region's nucleotide sequence