Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5614

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13981 and 13982 are separated by 758 nucleotides13982 and 13983 are separated by 436 nucleotides mRNA_5613: 13981 - K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5, at 512,639 to 514,652 13981 mRNA_5614: 13982 - BLAST Zinc finger protein DZIP1L [Rhizoctonia solani], at 515,411 to 519,507 13982 mRNA_5615: 13983 - HMMPfam-GRF zinc finger-PF06839, at 519,944 to 520,866 13983

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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514,677 + -0.3
514,684 + -0.9
516,086 + 13982 mRNA_5614 0.16 +0.4
516,617 + 13982 mRNA_5614 0.29 -1.6
516,749 - 13982 mRNA_5614 0.33 +2.0
516,790 + 13982 mRNA_5614 0.34 +0.2
517,426 + 13982 mRNA_5614 0.49 -0.5
517,580 + 13982 mRNA_5614 0.53 +0.0
517,857 + 13982 mRNA_5614 0.60 +2.9
517,981 - 13982 mRNA_5614 0.63 -0.8
518,294 - 13982 mRNA_5614 0.70 +0.8
518,411 + 13982 mRNA_5614 0.73 -0.5
518,970 - 13982 mRNA_5614 0.87 -0.6
519,032 - 13982 mRNA_5614 0.88 +1.7
519,308 + -0.3
519,418 + +0.9
519,634 + +1.1
519,928 + +0.3
520,219 - 13983 mRNA_5615 0.30 -0.1
520,389 + 13983 mRNA_5615 0.48 +0.1
520,442 - 13983 mRNA_5615 0.54 -0.1

Or see this region's nucleotide sequence