Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5654

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14021 and 14022 are separated by 599 nucleotides14022 and 14023 are separated by 216 nucleotides mRNA_5653: 14021 - Hypothetical Protein, at 603,450 to 604,586 14021 mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605,186 to 607,588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607,805 to 615,263 14023

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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604,398 + 14021 mRNA_5653 0.83 +1.6
604,546 - +0.7
604,660 - -0.5
604,709 - +0.0
604,809 + +0.2
604,811 + +0.9
604,813 - +0.5
604,850 - +0.5
604,891 - -0.4
604,893 + +0.2
604,897 - -0.2
604,900 + +0.1
604,915 + -0.7
604,916 + -1.6
604,928 - -0.3
604,928 - -0.1
604,928 - -0.2
604,934 - +1.4
604,945 - -0.1
604,987 - +2.6
604,988 - +1.1
605,001 + +2.0
605,005 - +0.6
605,005 + -0.6
605,178 - -0.0
605,456 + 14022 mRNA_5654 0.11 -0.6
605,569 + 14022 mRNA_5654 0.16 +0.1
606,167 + 14022 mRNA_5654 0.41 +1.1
606,332 + 14022 mRNA_5654 0.48 -0.2
606,899 - 14022 mRNA_5654 0.71 -1.3
607,001 - 14022 mRNA_5654 0.76 -1.0
607,063 + 14022 mRNA_5654 0.78 +2.0
607,108 - 14022 mRNA_5654 0.80 -1.1
607,157 + 14022 mRNA_5654 0.82 +0.7
607,184 - 14022 mRNA_5654 0.83 -0.5
607,186 + 14022 mRNA_5654 0.83 -0.6
607,205 + 14022 mRNA_5654 0.84 +0.6
607,206 + 14022 mRNA_5654 0.84 +0.7
607,207 - 14022 mRNA_5654 0.84 +0.7
607,208 - 14022 mRNA_5654 0.84 -0.3
607,209 + 14022 mRNA_5654 0.84 -1.5
607,352 + +1.7
607,518 - +0.6
607,643 - +2.5
607,646 + +0.7
607,648 - +1.8
607,653 + +0.2
607,656 + -0.5
607,659 + +0.1
607,659 + +0.3
607,661 - -0.5
607,668 - +1.1
607,668 - -0.2
607,669 - +0.2
607,671 + +0.2
607,673 - -0.6
607,680 + +2.1
607,681 + -0.5
607,684 - -0.9
607,690 + +0.8
607,709 + -0.0
607,760 + +1.7
607,763 + +1.5
607,769 + +0.1
607,770 - +1.5
607,786 + +0.3
607,818 - -0.5
607,821 + -0.0
607,827 - +0.7
607,853 - -0.3

Or see this region's nucleotide sequence