Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5662

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14029 and 14030 are separated by 264 nucleotides14030 and 14031 are separated by 389 nucleotides mRNA_5661: 14029 - K15151 MED10, NUT2 mediator of RNA polymerase II transcription subunit 10, at 626,154 to 626,959 14029 mRNA_5662: 14030 - Hypothetical Protein, at 627,224 to 629,083 14030 mRNA_5663: 14031 - K15441 TAD2, ADAT2 tRNA-specific adenosine deaminase 2, at 629,473 to 630,402 14031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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627,615 + 14030 mRNA_5662 0.21 +2.6
627,765 + 14030 mRNA_5662 0.29 +0.0
627,770 - 14030 mRNA_5662 0.29 +1.7
627,772 + 14030 mRNA_5662 0.29 +0.5
628,024 - 14030 mRNA_5662 0.43 +0.1
628,050 + 14030 mRNA_5662 0.44 +1.7
628,243 - 14030 mRNA_5662 0.55 -0.1
628,274 + 14030 mRNA_5662 0.56 +0.2
628,406 + 14030 mRNA_5662 0.64 -1.2
628,529 + 14030 mRNA_5662 0.70 +1.2
628,568 + 14030 mRNA_5662 0.72 -0.5
628,674 - 14030 mRNA_5662 0.78 +0.2
628,699 - 14030 mRNA_5662 0.79 +0.8
628,849 - 14030 mRNA_5662 0.87 -0.9
628,854 + 14030 mRNA_5662 0.88 -0.3
629,131 + +0.6
629,437 + -0.3

Or see this region's nucleotide sequence