Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5667

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14035 and 14036 are separated by 193 nucleotides mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642,793 to 648,199 14035 mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648,393 to 650,754 14036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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642,214 + +0.3
642,244 + +0.8
642,354 - +0.9
642,607 + -0.5
642,643 - +1.2
642,654 - +0.0
642,656 - +2.6
642,666 + +0.7
642,674 - +0.5
642,686 - -0.4
642,812 - -0.5
642,822 + -1.1
644,521 + 14035 mRNA_5667 0.32 -0.9
644,605 + 14035 mRNA_5667 0.34 +0.1
645,754 - 14035 mRNA_5667 0.55 -1.1
646,708 + 14035 mRNA_5667 0.72 +0.0
646,810 - 14035 mRNA_5667 0.74 -1.3
647,048 + 14035 mRNA_5667 0.79 -0.3
647,500 + 14035 mRNA_5667 0.87 -0.3
647,524 + 14035 mRNA_5667 0.87 +0.1
647,639 + 14035 mRNA_5667 0.90 -0.3
647,807 + -0.0
648,379 + +1.7
648,742 + 14036 mRNA_5668 0.15 +0.2
648,868 + 14036 mRNA_5668 0.20 +1.2
649,135 + 14036 mRNA_5668 0.31 -0.4
649,147 - 14036 mRNA_5668 0.32 -0.4

Or see this region's nucleotide sequence