Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5716

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14083 and 14084 are separated by 501 nucleotides14084 and 14085 are separated by 312 nucleotides mRNA_5715: 14083 - BLAST Elongator complex protein 4 [Ceraceosorus bombacis], at 757,827 to 758,501 14083 mRNA_5716: 14084 - Hypothetical Protein, at 759,003 to 760,646 14084 mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760,959 to 763,265 14085

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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758,059 + 14083 mRNA_5715 0.34 -0.1
758,080 + 14083 mRNA_5715 0.37 -0.3
758,094 - 14083 mRNA_5715 0.40 -0.3
758,187 + 14083 mRNA_5715 0.53 +0.6
758,370 - 14083 mRNA_5715 0.80 +1.7
758,383 - 14083 mRNA_5715 0.82 +2.4
758,500 + +1.1
758,509 + -0.8
758,819 - -0.1
758,823 + +1.1
758,834 - +0.9
758,845 - -0.9
758,884 - +0.2
758,885 - +0.9
758,891 - +0.5
758,894 + +0.2
758,895 + +0.6
758,901 + +1.6
758,902 - -1.1
758,904 - +0.4
758,916 - -0.2
758,926 - -0.0
758,933 + -0.2
758,936 - +0.9
758,937 - -0.1
758,944 + -0.7
758,957 + +0.5
758,963 + +0.7
758,976 - -0.1
759,091 - +0.7
759,112 + +1.0
759,135 + +0.3
759,227 - 14084 mRNA_5716 0.14 +1.0
759,245 - 14084 mRNA_5716 0.15 -0.6
759,246 + 14084 mRNA_5716 0.15 +1.9
759,277 - 14084 mRNA_5716 0.17 -0.2
759,295 + 14084 mRNA_5716 0.18 +0.6
759,300 - 14084 mRNA_5716 0.18 +1.3
759,392 - 14084 mRNA_5716 0.24 +0.8
759,400 + 14084 mRNA_5716 0.24 +1.1
759,556 + 14084 mRNA_5716 0.34 +0.0
759,569 - 14084 mRNA_5716 0.34 +0.1
759,853 + 14084 mRNA_5716 0.52 +1.5
760,159 + 14084 mRNA_5716 0.70 +0.6
760,299 + 14084 mRNA_5716 0.79 +0.1
760,455 + 14084 mRNA_5716 0.88 +0.3
760,559 - +0.1
760,871 - +1.8
760,872 - +0.2
760,878 + -0.3
760,880 - +1.0
760,882 - -0.5
760,886 + +0.3
760,899 + +2.6
760,899 + +0.7
760,901 + +2.2
761,037 + +0.2
761,041 + -0.2
761,064 - -0.4
761,208 + 14085 mRNA_5717 0.11 +0.8
761,322 - 14085 mRNA_5717 0.16 -0.3
761,325 + 14085 mRNA_5717 0.16 -0.4
761,327 - 14085 mRNA_5717 0.16 -1.7
761,613 - 14085 mRNA_5717 0.28 -0.0

Or see this region's nucleotide sequence