Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5723

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14090 and 14091 are separated by 349 nucleotides14091 and 14092 are separated by 114 nucleotides mRNA_5722: 14090 - SUPERFAMILY--SSF52047, at 770,253 to 773,842 14090 mRNA_5723: 14091 - K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase, at 774,192 to 776,044 14091 mRNA_5724: 14092 - K05310 GPI7 ethanolaminephosphotransferase, at 776,159 to 779,515 14092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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773,403 + 14090 mRNA_5722 0.88 +0.3
773,522 - +0.8
773,821 - +0.8
773,822 + -0.0
773,990 + +0.5
774,104 - -0.1
774,140 - +1.8
774,282 - -0.1
774,465 + 14091 mRNA_5723 0.15 +0.5
775,148 - 14091 mRNA_5723 0.52 +0.2
775,150 + 14091 mRNA_5723 0.52 +0.0
776,247 + -0.8
776,324 - -0.2
776,333 - -0.7
776,341 + -0.1
776,784 - 14092 mRNA_5724 0.19 -0.5
777,002 + 14092 mRNA_5724 0.25 +0.1

Or see this region's nucleotide sequence