Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5733

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14100 and 14101 overlap by 62 nucleotides mRNA_5732: 14100 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 798,563 to 800,717 14100 mRNA_5733: 14101 - KOG4197 FOG PPR repeat, at 800,656 to 803,521 14101

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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799,769 + 14100 mRNA_5732 0.56 -1.4
800,037 - 14100 mRNA_5732 0.68 -2.5
800,229 - 14100 mRNA_5732 0.77 -2.6
800,358 + 14100 mRNA_5732 0.83 -1.5
800,946 - 14101 mRNA_5733 0.10 -0.2
804,229 - +0.5
804,344 - +0.4

Or see this region's nucleotide sequence